SLiMIM - Models

SLiMIP
SLiMID
SLiMIM

JSMol Visualizer

SLiMI- Models Accession Table

-> Download Analysis.zip Click to download

Discarded

Validated

Reso.	%Ident	Software	Alignement	PFam Domain Model	Motifs	Peptide Model
2.7	74.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- DELTKKFGTLTIHDD-	FASTA
2.7	74.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- DELTKKFGTLTIHDD-	FASTA
2.7	74.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHD--	FASTA
2.7	74.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHD--	FASTA
2.3	74.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- EDMTKKFGTLTIHD--	FASTA
2.3	74.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- EDMTKKFGTLTIHD--	FASTA
2.5	74.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHD--	FASTA
2.5	74.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHD--	FASTA
2.4	74.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHDD-	FASTA
2.4	74.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHDD-	FASTA
2.0	74.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHD--	FASTA
2.0	74.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- DEMTKKFGTLTIHD--	FASTA
2.2	70.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- -ELALKLAGLDINKTE	FASTA
2.2	70.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- -ELALKLAGLDINKTE	FASTA
2.1	70.3	SCWRL	BLAST	FASTA	RLVAQIGETLQL---- -ELALKLAGLDINKTE	FASTA
2.1	70.3	SCWRL	MAFFT	FASTA	RLVAQIGETLQL---- -ELALKLAGLDINKTE	FASTA

Modeling Config Recap

Server Access

User ID = FRAT2_BIOGRID_EXAMPLE
Modeling ID = kRHUgTbWPYND3l

Modeling Query

Uniprot PFam = O14980
PFam ID = PF08389
Uniprot ELM = O75474
ELM Class = TRG_NES_CRM1_1

Query ELM motif(s) : 1 peptides

RLVAQIGETLQL

Query ELM sequence : 233 A.A

MPCRREEEEEAGEEAEGEEEEDDSFLLLQQSVTLGSSGEVDRLVAQIGETLQLDAAQDSPASPCAPPGVPLRAPGPLAAAVPADKARPPAVPLLLPPASAETVGPAPSGALRCALGDRGRVRGRAAPYCVAEVAAGPSALPGPCRRGWLRDAVTSRRLQQRRWTQAGARAGDDDPHRLLQQLVLSGNLIKEAVRRLQRAVAAVAATGPASAPGPGGGRSGPDRIALQPSGSLL

Query PFam sequence : 101 A.A - From AA 520 to 620

VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT